PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093161.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 306aa MW: 34475.3 Da PI: 5.7462

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5.1e-12	131	177	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f L +l+P + kKl+K ++Le A+++I +Lq XP_027093161.1 131 YHVAAERKRREKLSDLFIALSKLVPGL-----KKLDKTSVLEDATKHIEELQ 177 6999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MEGSMDMAGF NNQYIINSWP DEQVDDGFFG IKPFLSEVFP AIPYCNSESI PIQMPQTCMK 60 QKFKQLNDTN LSPSHPTVES SQKGSSPFST TQFISFGKSS PYSSDGEKLY EDDIVYNSRS 120 PIRRTPIQAQ YHVAAERKRR EKLSDLFIAL SKLVPGLKKL DKTSVLEDAT KHIEELQERL 180 KTLEEGEKNN STAPNTMVER CIISTCSDNT SSFKGTTLEQ IPEIKVKIQG KSVLIKILCE 240 KKYYGSISSM STELEKLHLT ILDTRILRFG SCTLDITLKA QMDSAFSVTV EDIIEHLQLG 300 IFQLQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	ERKRRE
2	137	142	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	9e-42	bHLH family protein