PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092858.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SRS

Protein Properties

Length: 361aa MW: 38627.3 Da PI: 8.1775

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216.4	6.4e-67	122	279	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel...kskkqsals 87 t++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqq a +++++++++ + +++kr re+ +s+l+ XP_027092858.1 122 ATMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQVSALQTQQQQQQQnqqqlsliRGDNPKRLRENpggGGGGSSSLA 216 689********************************************9988877766666555678888888888888888555556667777 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +t+l++++ +++ ++P+ev+ +a frcvrvs++dd+ee++aYqtav+igGhvfkGiLydqGle+ XP_027092858.1 217 CTRLPTST----SDVGNFPAEVNYPASFRCVRVSAMDDAEEQYAYQTAVNIGGHVFKGILYDQGLES 279 77777765....56899*********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MSGFFSLGGG KEQEQQEQQD TTNNSSFYLF KNEEIYNKGF ELWQQYYQLH QQRIHHHHHH 60 QVVGQDVDFS VGPSRRIISS GSGGSGSIGD DSSYRSAGFR VMRHGGGGGT GSGSSSGGGG 120 GATMNCQDCG NQAKKDCPHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQVSALQTQQ 180 QQQQQNQQQL SLIRGDNPKR LRENPGGGGG GSSSLACTRL PTSTSDVGNF PAEVNYPASF 240 RCVRVSAMDD AEEQYAYQTA VNIGGHVFKG ILYDQGLESR YATSGRAGAG EASSGGGGGH 300 GHHHDHDPQP PLNLIGTAAA ATANAAVTST NPALTMLDPS IYPTPLSAFM AGTQFFPPPR 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MSGFFSLGGG KEQEQQEQQD TTNNSSFYLF KNEEIYNKGF ELWQQYYQLH QQRIHHHHHH  60
QVVGQDVDFS VGPSRRIISS GSGGSGSIGD DSSYRSAGFR VMRHGGGGGT GSGSSSGGGG  120
GATMNCQDCG NQAKKDCPHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQVSALQTQQ  180
QQQQQNQQQL SLIRGDNPKR LRENPGGGGG GSSSLACTRL PTSTSDVGNF PAEVNYPASF  240
RCVRVSAMDD AEEQYAYQTA VNIGGHVFKG ILYDQGLESR YATSGRAGAG EASSGGGGGH  300
GHHHDHDPQP PLNLIGTAAA ATANAAVTST NPALTMLDPS IYPTPLSAFM AGTQFFPPPR  360
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-62	SRS family protein