PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092486.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 352aa MW: 39392.4 Da PI: 7.3776

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl XP_027092486.1 14 KGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.5	5.4e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_027092486.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKDQHARKS TSQKQEMLRK GMRENINHMV SSSSSDYNSN QSPYWPELPV LPPVPYSNEE 180 PRFNDHASIR KLLIKLGGRF SDDDDQPTNG TMNTNLQYPL DSTNSLVQVQ PLYDQQINML 240 SSAPLDVLNT TSSLPETLYT IDAADLSTLQ GQNSFQAGLE QMICNNPQRL DGLEFLCGDI 300 LINHRTGNTC GGSSDWGEMN SLVLPAVASG YEGLQQGTLQ ECAIDQLRYL GP

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKDQHARKS TSQKQEMLRK GMRENINHMV SSSSSDYNSN QSPYWPELPV LPPVPYSNEE  180
PRFNDHASIR KLLIKLGGRF SDDDDQPTNG TMNTNLQYPL DSTNSLVQVQ PLYDQQINML  240
SSAPLDVLNT TSSLPETLYT IDAADLSTLQ GQNSFQAGLE QMICNNPQRL DGLEFLCGDI  300
LINHRTGNTC GGSSDWGEMN SLVLPAVASG YEGLQQGTLQ ECAIDQLRYL GP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-81	MYB family protein