PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092392.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 252aa MW: 29310.1 Da PI: 6.4024

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.8	2.7e-26	76	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++++ + ++tr gC a+l+v ++ +kw+vtk+++eHnH+l+ XP_027092392.1 76 DFYVAYGRQTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYVQRKDR-VlpPPPVTREGCPAMLRVAFKDGAKWVVTKFVKEHNHSLM 166 6****************************************98883322.245899******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MDNSTSQVFN SVERKSFLPI DSNGNVFLDD ELSTSMELCI GEDDKCVGQL IAMPLTENVV 60 EPHIGMEFNS RDDARDFYVA YGRQTGFTVR IHHNRRSRIN NMVIGQDFVC SKEGFREKKY 120 VQRKDRVLPP PPVTREGCPA MLRVAFKDGA KWVVTKFVKE HNHSLMSPNK VPWRGCGKNL 180 INQDEKDQRI RELTLELYNE RQRCKRRCAV YQEQLQTLLK YIEDHTDHLS KSVQEVVERV 240 QSIENEELED SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	RQRCKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-37	FAR1 family protein