PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027092364.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 275aa    MW: 29506.9 Da    PI: 6.7792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027092364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13211256655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  XP_027092364.1 211 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 256
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MQPAGGGGVG LSRGLGGGGG GGGFARFRSA PATWLEALLE NDDDNDVVLD PPVLASSSNK  60
PPLHPPASSP VQSTQQQQQS SAASSRYAAD LGMLDTVGSG GGGLSGLLRQ NSSPAELLSD  120
GYFSNFGIPA NYDNFLMSSL DVSSESPSKR PREADSNNPS PKASSQVKGE QSEQLHAGMG  180
RLLDSEMEKL SEDAVLCRVR AKRGCATHPR SIAERVRRTR ISDRIRKLQE LVPNMDKQTN  240
TADMLEEAVE YVKFLQKQIQ ELKEQQKKCK CFAKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-49bHLH family protein