PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027092257.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 578aa    MW: 65001.2 Da    PI: 8.4812
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027092257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17161009100
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                     ++ +s  l lp kf ++++g +++  t  l  +sg++W  +l  +++ +  +l++GW  Fv+++ L++gD++vF++dg+  f  +v+vf+ks
  XP_027092257.1  16 SS-SSEALKLPFKFKKHIDGTTPG--TAFLLGPSGNTWYANL--TQQNDDLFLQDGWVAFVRDHSLESGDSLVFRYDGNLHF--TVQVFDKS 100
                     44.44559******9888888555..8***************..999999**************************997777..9***9985 PP
2B351.42e-16248342198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f kv+++ + + s  l +p +fa +h   ++++++++l +++g+sW+++ i  ++ + ++++ +GW +Fv++n+++egD+++F+l+++ e   +v
  XP_027092257.1 248 FMKVMKRFNISGSYTLNVPYQFAMAHL--PKCKVKIVLHNLKGESWTINSIPtTRVQTSHTFCGGWLGFVRDNNINEGDICIFELVHKCEL--RV 338
                     67777777777888899******9995..35999****************77566666699***********************9985444..77 PP

                     EEE- CS
              B3  95 kvfr 98 
                     +++r
  XP_027092257.1 339 HIVR 342
                     7765 PP
3B351.12.4e-16464556196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f+ v+++ +v+ s  l +p +f  +h   + + ++++l++++g+ W+v+ i + k ++ +++ +GW  Fv++n+++ gD+++F+l+g++e   +v
  XP_027092257.1 464 FVRVMKKFNVSGSYTLKIPYQFSMQHL--PSCRTEVILRNLKGKCWTVNSIPTIKVQTlHTFCGGWMAFVRDNDIQMGDICIFELIGKNEL--RV 554
                     667778888999999*******98885..45889****************998888888999************************96555..66 PP

                     EE CS
              B3  95 kv 96 
                     ++
  XP_027092257.1 555 HI 556
                     55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    
MWDDKKPHFL VGFNPSSSSE ALKLPFKFKK HIDGTTPGTA FLLGPSGNTW YANLTQQNDD  60
LFLQDGWVAF VRDHSLESGD SLVFRYDGNL HFTVQVFDKS SCEKESTFSC ECSQSPSNYN  120
CRLMKKRDRE NSALLDCIIE GIPKRVRTSQ VNTQCISTIQ ELNRDLTDKN ECAEEEAGYF  180
SERCQEPNFL NQIENGSCTL KNSVTIAVPS VRNSEATTGE RTGKEDLLLS APEAERVARA  240
FTSSLPCFMK VMKRFNISGS YTLNVPYQFA MAHLPKCKVK IVLHNLKGES WTINSIPTTR  300
VQTSHTFCGG WLGFVRDNNI NEGDICIFEL VHKCELRVHI VRVRREGVND RSENEAHKMM  360
VNSSFAMPLK ISRRKTMKIS TKPCNLSLQQ LKKFDKKGHD PIKVKCGNES ISGELVYSVE  420
SLTVIYETSS QGRSSSHTKG CISMKSAPEE KLAAESFLSS FPHFVRVMKK FNVSGSYTLK  480
IPYQFSMQHL PSCRTEVILR NLKGKCWTVN SIPTIKVQTL HTFCGGWMAF VRDNDIQMGD  540
ICIFELIGKN ELRVHISGVG QQGSDYQSGR VGSNAVVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-17B3 family protein