PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091694.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 359aa MW: 40169.6 Da PI: 9.8649

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.5	1.3e-14	112	190	14	97
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + l+lp +f+++ ++k + + + ++ Wev++ k+s++ ++ +kGWk+F ++++Lk gDf+vF+++g + f + vf XP_027091694.1 112 AELRLPPRFCRKLSEK--IP-EQAFLGSRKGFWEVTI--GKRSDGllTLGGKGWKSFIHDHELKFGDFMVFEHTGGMVF--KTYVF 190 349******99544..33.23677778889*..999988766667*******************9998888..55555 PP
2	B3	51.7	1.6e-16	250	335	5	87
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87 +++ +l+ ++l++p +f+++ ++ +++ +tl++ sg +W+vkl+ + + +v++kGW +F +n+Lk D+++F+ld++ XP_027091694.1 250 TINRRNLRCNILTIPSEFVNSKYLN--QKTSVTLRNASGGEWQVKLTAyrtgyK----AaytqVVMAKGWGDFHMSNQLKIDDVCLFELDRS 335 5677888999*******998777..4457***********66553333....245669**********************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MAKRKDKAVK EKRALLLKCN TNTYHVESSN SMRNHLSRSK KDTTVQEKDA RKGGRIAITG 60 LTLQDPSIEC RGRDHTGVSG GKMRSGCATN NQQGESRVVS RFFKFIAPDF EAELRLPPRF 120 CRKLSEKIPE QAFLGSRKGF WEVTIGKRSD GLLTLGGKGW KSFIHDHELK FGDFMVFEHT 180 GGMVFKTYVF DPSACEKDYS SAGSENLTTN KVPCAQPRTL PNVAGIKDAE EEAEEAVGSY 240 YPDNPHFRIT INRRNLRCNI LTIPSEFVNS KYLNQKTSVT LRNASGGEWQ VKLTAYRTGY 300 KAAYTQVVMA KGWGDFHMSN QLKIDDVCLF ELDRSTTLGS PSNAVMNVRV LSNNIPSTS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MAKRKDKAVK EKRALLLKCN TNTYHVESSN SMRNHLSRSK KDTTVQEKDA RKGGRIAITG  60
LTLQDPSIEC RGRDHTGVSG GKMRSGCATN NQQGESRVVS RFFKFIAPDF EAELRLPPRF  120
CRKLSEKIPE QAFLGSRKGF WEVTIGKRSD GLLTLGGKGW KSFIHDHELK FGDFMVFEHT  180
GGMVFKTYVF DPSACEKDYS SAGSENLTTN KVPCAQPRTL PNVAGIKDAE EEAEEAVGSY  240
YPDNPHFRIT INRRNLRCNI LTIPSEFVNS KYLNQKTSVT LRNASGGEWQ VKLTAYRTGY  300
KAAYTQVVMA KGWGDFHMSN QLKIDDVCLF ELDRSTTLGS PSNAVMNVRV LSNNIPSTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31640.1	1e-23	B3 family protein