PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027091556.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 283aa    MW: 32461.5 Da    PI: 9.9078
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027091556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.6e-19138227198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+e+h    +++++++lede+g ++e  +i ++++    l++GW+ F+ +++L++gD +vF+l++ ++f  +v 
  XP_027091556.1 138 FIKSMVRSHVYSCFWLGLPSSFCEDHLP--KSTVDMVLEDEEGLEFEAVYISKRSG----LSGGWRAFALEHKLDDGDALVFELIEPTRF--KVY 224
                     89************************53..3789****************655555....9***********************987777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_027091556.1 225 IVR 227
                     877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MAKDNDANTY EEARKQRVLD NKKRFEDLGI LSISKSLSEV SKSEKKSQRS LSRPKPNDVY  60
MVEPRRSSRA RTQVTSYRDD VDVDLPRMRK RSKWSSSWAS YLARPMEEVR AASYEERSRA  120
RLSAEKLQSN LQLENPSFIK SMVRSHVYSC FWLGLPSSFC EDHLPKSTVD MVLEDEEGLE  180
FEAVYISKRS GLSGGWRAFA LEHKLDDGDA LVFELIEPTR FKVYIVRAVS CSKQEEGGSD  240
AGETPKEKTK QRKKDNTRSK DSIRPEEDAS SKASGRRRSS RLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282GRRRSSRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.17e-58B3 family protein