PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091503.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 659aa MW: 69473.8 Da PI: 6.2148

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091503.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.9e-08	199	243	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++WT Ed+ l av+++G g+W+ I + Rt+ q+ rw XP_027091503.1 199 RKAWTDAEDQELMAAVRKFGEGNWANILKGDFkSDRTASQLSQRW 243 789************************874223566666666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MGEKSKKPRK NFVTEEDIST LLQRYTATTV LTLLQEVAQV QDSKIDWNVL VKKSTTGISN 60 PREYQMLWRH LAYRDALLDR LDDAAAQPLD DDSDLECDLE AFPAVSNEAM AEAAACVKVL 120 IASGPSDPNG LTVEAPLTIN IPKGQPSKAP ENSHCNVFAQ GTNITVPVSV QKPSLPSVAS 180 AEALDSNGAA NANLPRRKRK AWTDAEDQEL MAAVRKFGEG NWANILKGDF KSDRTASQLS 240 QRWAIIKKRQ GNLTLGTGSQ LSEVQLAARR AVSLALNMPM GDTLKSSPSI SSGTNANVAH 300 SKLGPPHSNE TPSIVAPLQH DSVSTAGHQI GSSKSRVTTK KPSTKSTISS DSMVKAAAVA 360 AGARIATPSD AATLLKAAQS KNAVHIMPGG SVLKSSMAGN ANSLPSNVHF IRTGLASKPL 420 STYSTAAVSS SQNGGTQQVL GTSSKPAIPL NQPNSAGTAQ ELSAPSEVKS VAVPGPVSRL 480 ESKIVEDFGT FMCNSEKELL KENQAGFKCD GSNEQMKGDL TAVSVDTKPN QVQEDQGASE 540 NLCSDQAEGG QASVMGEILK EHASGDEVSA SANALNKKAG DLIDSQSSSM AASNGHLGPT 600 DNQASTTFDS VRKDDVMGMP VKCISDKPVK EMFENNMAKR EEGLIMDLDG NDGQANLKQ

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MGEKSKKPRK NFVTEEDIST LLQRYTATTV LTLLQEVAQV QDSKIDWNVL VKKSTTGISN  60
PREYQMLWRH LAYRDALLDR LDDAAAQPLD DDSDLECDLE AFPAVSNEAM AEAAACVKVL  120
IASGPSDPNG LTVEAPLTIN IPKGQPSKAP ENSHCNVFAQ GTNITVPVSV QKPSLPSVAS  180
AEALDSNGAA NANLPRRKRK AWTDAEDQEL MAAVRKFGEG NWANILKGDF KSDRTASQLS  240
QRWAIIKKRQ GNLTLGTGSQ LSEVQLAARR AVSLALNMPM GDTLKSSPSI SSGTNANVAH  300
SKLGPPHSNE TPSIVAPLQH DSVSTAGHQI GSSKSRVTTK KPSTKSTISS DSMVKAAAVA  360
AGARIATPSD AATLLKAAQS KNAVHIMPGG SVLKSSMAGN ANSLPSNVHF IRTGLASKPL  420
STYSTAAVSS SQNGGTQQVL GTSSKPAIPL NQPNSAGTAQ ELSAPSEVKS VAVPGPVSRL  480
ESKIVEDFGT FMCNSEKELL KENQAGFKCD GSNEQMKGDL TAVSVDTKPN QVQEDQGASE  540
NLCSDQAEGG QASVMGEILK EHASGDEVSA SANALNKKAG DLIDSQSSSM AASNGHLGPT  600
DNQASTTFDS VRKDDVMGMP VKCISDKPVK EMFENNMAKR EEGLIMDLDG NDGQANLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-61	MYB_related family protein