PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091291.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 479aa MW: 53256.2 Da PI: 6.6516

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091291.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.5	4.9e-11	430	477	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 rW+t E+e l +v+++G g+Wk I + Rt+ ++k++w+++ XP_027091291.1 430 RWSTSEEETLRIGVEKYGRGNWKVILNAYRdvfDERTEVDLKDKWRNL 477 9******************************99*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MDVDIDVDIA RWILEFLVRQ PLDDRIVSSL ISILPPTNEN SGLKKSLLLR RIESEISAGS 60 VSEKILDILE QIEELDFQDK IKQHSDLIKA AYCSVAVACT AKFLNDKDVD SKFRYFDAVR 120 RIWRGRVCKM ENAEKVGLIS EELKSWKDEL EAAVWDESIW DSVLQKSKGL DAVGAVRLYV 180 REEKDDIGPS FLELVAEALR ADDKLKGILG FKGTHGGAIQ SSGPRDANRE VQRANVVSGR 240 KHVASKRIRG APSGMSRGAK IIDGDTSGAD ISGKTFDLPS TPEVHEVQEA LKSSSLDLKA 300 VVKDPLPDAL NIADTVVSSI ERKDAGKQPV EENHVGANPS IAESSGAVQA NEGTLGNHCS 360 EHQKDAPRQS LMARSSTART FEWDDSVDAL AGDSPNPGNG VQLPSPKRRV VSPLKKYEIN 420 NMKKRRKFKR WSTSEEETLR IGVEKYGRGN WKVILNAYRD VFDERTEVDL KDKWRNLTR

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MDVDIDVDIA RWILEFLVRQ PLDDRIVSSL ISILPPTNEN SGLKKSLLLR RIESEISAGS  60
VSEKILDILE QIEELDFQDK IKQHSDLIKA AYCSVAVACT AKFLNDKDVD SKFRYFDAVR  120
RIWRGRVCKM ENAEKVGLIS EELKSWKDEL EAAVWDESIW DSVLQKSKGL DAVGAVRLYV  180
REEKDDIGPS FLELVAEALR ADDKLKGILG FKGTHGGAIQ SSGPRDANRE VQRANVVSGR  240
KHVASKRIRG APSGMSRGAK IIDGDTSGAD ISGKTFDLPS TPEVHEVQEA LKSSSLDLKA  300
VVKDPLPDAL NIADTVVSSI ERKDAGKQPV EENHVGANPS IAESSGAVQA NEGTLGNHCS  360
EHQKDAPRQS LMARSSTART FEWDDSVDAL AGDSPNPGNG VQLPSPKRRV VSPLKKYEIN  420
NMKKRRKFKR WSTSEEETLR IGVEKYGRGN WKVILNAYRD VFDERTEVDL KDKWRNLTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	407	427	KRRVVSPLKKYEINNMKKRRK
2	423	427	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06910.1	7e-20	MYB_related family protein