PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091281.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 487aa MW: 54057.1 Da PI: 6.732

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.4	5e-11	438	485	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 rW+t E+e l +v+++G g+Wk I + Rt+ ++k++w+++ XP_027091281.1 438 RWSTSEEETLRIGVEKYGRGNWKVILNAYRdvfDERTEVDLKDKWRNL 485 9******************************99*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MDVDIDVDIA RWILEFLVRQ PLDDRIVSSL ISILPPTNEN SGLKKSLLLR RIESEISAGS 60 VSEKILDILE QIEELDFQDK IKQHSDLIKA AYCSVAVACT AKFLNDKDVD SKFRYFDAVR 120 RIWRGRVCKM ENAEKVGLIS EELKSWKDEL EAAVWDESIW DSVLQKSKGL DAVGAVRLYV 180 REEKDDIGPS FLELVAEALR ADDKLKGILG FKGTHGGAIQ SSGPRDANRG GCFSIHVEVQ 240 RANVVSGRKH VASKRIRGAP SGMSRGAKII DGDTSGADIS GKTFDLPSTP EVHEVQEALK 300 SSSLDLKAVV KDPLPDALNI ADTVVSSIER KDAGKQPVEE NHVGANPSIA ESSGAVQANE 360 GTLGNHCSEH QKDAPRQSLM ARSSTARTFE WDDSVDALAG DSPNPGNGVQ LPSPKRRVVS 420 PLKKYEINNM KKRRKFKRWS TSEEETLRIG VEKYGRGNWK VILNAYRDVF DERTEVDLKD 480 KWRNLTR

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MDVDIDVDIA RWILEFLVRQ PLDDRIVSSL ISILPPTNEN SGLKKSLLLR RIESEISAGS  60
VSEKILDILE QIEELDFQDK IKQHSDLIKA AYCSVAVACT AKFLNDKDVD SKFRYFDAVR  120
RIWRGRVCKM ENAEKVGLIS EELKSWKDEL EAAVWDESIW DSVLQKSKGL DAVGAVRLYV  180
REEKDDIGPS FLELVAEALR ADDKLKGILG FKGTHGGAIQ SSGPRDANRG GCFSIHVEVQ  240
RANVVSGRKH VASKRIRGAP SGMSRGAKII DGDTSGADIS GKTFDLPSTP EVHEVQEALK  300
SSSLDLKAVV KDPLPDALNI ADTVVSSIER KDAGKQPVEE NHVGANPSIA ESSGAVQANE  360
GTLGNHCSEH QKDAPRQSLM ARSSTARTFE WDDSVDALAG DSPNPGNGVQ LPSPKRRVVS  420
PLKKYEINNM KKRRKFKRWS TSEEETLRIG VEKYGRGNWK VILNAYRDVF DERTEVDLKD  480
KWRNLTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	415	435	KRRVVSPLKKYEINNMKKRRK
2	431	435	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	3e-18	MYB_related family protein