PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091071.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 247aa MW: 26510.2 Da PI: 8.7283

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7.4e-42	42	142	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ el+ XP_027091071.1 42 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPENQRVDAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQGELH 136 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++e+ XP_027091071.1 137 AVRNEI 142 *99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MSRERERLDE IAKKLKTEFD ASSQMGRRNM LGPPGTLNTI TPCAACKLLR RRCAEECPFS 60 PYFSPHEPQK FAAVHKVFGA SNVSKMLMEV PENQRVDAAN SLVYEANVRL RDPVYGCMGA 120 ISALQQQVQS LQGELHAVRN EILRYKYREA ANNIIASTHA ALVSSGNHVS VAMMPQAPAT 180 PTPTPAPAPS TPTPAPAPPP PPPAQPSASL VVVSTTSSAP SAPSLYTPPS STASFSTITN 240 NNIPFFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	7e-83	LBD family protein