PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027091064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 26873.6 Da PI: 8.7184 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.6 | 7.6e-42 | 45 | 145 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ el+ XP_027091064.1 45 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPENQRVDAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQGELH 139 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++e+ XP_027091064.1 140 AVRNEI 145 *99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MSRESIYRER LDEIAKKLKT EFDASSQMGR RNMLGPPGTL NTITPCAACK LLRRRCAEEC 60 PFSPYFSPHE PQKFAAVHKV FGASNVSKML MEVPENQRVD AANSLVYEAN VRLRDPVYGC 120 MGAISALQQQ VQSLQGELHA VRNEILRYKY REAANNIIAS THAALVSSGN HVSVAMMPQA 180 PATPTPTPAP APSTPTPAPA PPPPPPAQPS ASLVVVSTTS SAPSAPSLYT PPSSTASFST 240 ITNNNIPFFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-80 | LBD family protein |