PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027091003.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 235aa    MW: 27086.2 Da    PI: 10.4702
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027091003.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.3e-18131220299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +k +++s+v+   +l lp +f ++h  +k ++ t+tl de+g +W+  +  rk++    l++GWk+F  +++L +gD +vF+l++ + f  +v++
  XP_027091003.1 131 VKPMLQSHVTGGFWLGLPSHFSKRHL-PK-RDDTVTLVDEQGDKWRTIYLARKTG----LSGGWKKFSVDHDLVDGDALVFQLIQPTVF--KVHI 217
                     68999*****************9994.33.5569***************656665....*************************98888..8988 PP

                     E-S CS
              B3  97 frk 99 
                     +r+
  XP_027091003.1 218 IRE 220
                     876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MVKSKVKYEQ LRQQRMEENK KKLEKLHLPL LSQALQKAAL SPKTSPMKRV KPRTIRTELV  60
PVRRSGRFTN KPAPQYKEVV FYERVQLPRS TVHPKRDLSN RVYASDEARA WAIEKAEKLE  120
SSLESGYPTL VKPMLQSHVT GGFWLGLPSH FSKRHLPKRD DTVTLVDEQG DKWRTIYLAR  180
KTGLSGGWKK FSVDHDLVDG DALVFQLIQP TVFKVHIIRE NGFTEENSHE AICDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-54B3 family protein