PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090742.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 289aa    MW: 33289.9 Da    PI: 6.9025
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.59.2e-101683269
        trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69
                    W+  e l+L++  + +e + r++ +  ++W+ + +++++ g++rs +qCk+kw++l+ + kk+k++e 
  XP_027090742.1 16 WSAWECLTLVNEINAVEGEWRQTLASFQKWQLIVENCSALGMNRSMNQCKKKWDSLRSEQKKVKQWEA 83
                    9999**************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MERGSRCTRS QAAPDWSAWE CLTLVNEINA VEGEWRQTLA SFQKWQLIVE NCSALGMNRS  60
MNQCKKKWDS LRSEQKKVKQ WEAAYWSFAT AEKKELGLPE EFDKELFNAV EKHMNQRGDD  120
PAAPDTELDS DPEARPIASK MFLQTGPKKQ RKKRIPPRKD KFEERFHPWK HILKGVVKPE  180
PSALDEIPDQ PPKSTVQMVK PEQISEEEKQ KIMTAKLLEN AQLINAVLQG NLAEDVDYKL  240
ADLKNNEAMQ TDSTRRQGDK IIDCLGNIVS TLNQFCHLVE ECNLRPQRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-46Trihelix family protein