PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090708.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 949aa    MW: 104675 Da    PI: 5.2157
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.3e-24147248199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv  ++L++gD+v+F   ++++
  XP_027090708.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGTKRLRAGDSVLFI--RDEK 238
                     99*********************999*****9555554.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r+
  XP_027090708.1 239 SQLLLGVRRA 248
                     7789999997 PP
2Auxin_resp117.11.5e-38273356183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv+++++++k+++ +++s+GmRf m+fete+ss+rr++Gt+vg+sdldp+rWp+SkWrsL+
  XP_027090708.1 273 AAHAAANRSPFTIFYNPRACPSEFVIPLARYRKSVYgTQLSAGMRFGMMFETEESSKRRYMGTIVGISDLDPLRWPGSKWRSLQ 356
                     79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    
MGAVEEKIKG GALVPGVQNS LLEEMKLLKE MQDQSGIRKP INSELWHACA GPLVMLPQVG  60
SLVYYFPQGH SEQVSVSTNR TATSQIPNYP NLPSQLLCQV HNVTHHADKD TDEIYAQMSL  120
QPVNSDKDIF PMPDFGIKPS KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPQLDYSM  180
QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSMFV GTKRLRAGDS VLFIRDEKSQ  240
LLLGVRRANR QQAALPSSVL SADSMHIGVL AAAAHAAANR SPFTIFYNPR ACPSEFVIPL  300
ARYRKSVYGT QLSAGMRFGM MFETEESSKR RYMGTIVGIS DLDPLRWPGS KWRSLQVEWD  360
EPGCGDKQNR VSPWEIETPE SLFIFPSLTA GLKRPFQSAF LGAQTEWESL VNKPFLRVPG  420
NLSGDIVCPS VSNPWSEQLM KMLIRPNCVD NLPSTASSIL EANAKVSPVL EAEKITQAVI  480
KQKADIIPQE HVSSQSESIQ QSHLDQANNS KLNFSSQSVL PGKPQHLDKL GNQTPVIHTE  540
ATKLEPELQS DQLSQYSSLG HCNDDRLVVK PANSHNLVND IVLLNQNNNM LAVQASPKMM  600
QAQLDSHLLQ SLPSDVSQVE NSIADGLFVY PDHNEWNLYP SSCQSLAGLL KPPGSSSAAI  660
RKHDQPVILS GGLGPELSTI EELWNNQFNN ARFLSQTNPL VSFPQQDLPN LHLLASSFGL  720
KDLSNESSNQ SDMYSCLNFD GNNSGSTVVD PSVSSTALDE FCTLKNSNFQ SPSDYLMGNF  780
NSCQDVQSQI TSTSLADSQA FSVQEFVDNS GGTSSSDVDF DESNALPNSS WQQTTPRVRT  840
YTKIQKAGSV GRSIDVSSFK NYDELCSAIE RMFGLEGLLN DSKGSGWKLV YVDFENDVLL  900
VGDDPWEEFV GCVKCIRILS PSEVQQMGEE GMQLLNSVSE AGRSCDGLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein