PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090240.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 673aa MW: 77668 Da PI: 8.203

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.4	2.3e-23	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rt+a t+tgC ak+++ + + + k++v++l+leHnHel XP_027090240.1 26 KFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTQAPTKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113 6***************9998.8999************9999.9999**************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MDCSKLAENG TPELGIEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTQAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSV AQGFQAEISE DAGLSLKQSH ELMGTEAGGM GNVGYTRDDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY NFFGNVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKHPSTIL 300 TDQDHAMAAA LSIVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE 360 QFNRVWEAMV KKHNLENNEW LSGLYKIHDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH 420 LKLDHNLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVFA 480 AFQNEYGEST AMVILRQQDA AMFVEFAVMR YDGGSERTVV FNRNDLSVRC SCKKYENEGI 540 LCGHALKEFD TVGIKIIPPE YIKRRWTKRA RAGDCFDRRG QEVVADPKVM ISTRYREFAP 600 AMIKVATRAA MSKDTSKVAI TVISDLSKRV ELLLSESEEQ PLQNQKNLNM EKRDKIEMVN 660 EMGEAVVARG IKK

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MDCSKLAENG TPELGIEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTQAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSV AQGFQAEISE DAGLSLKQSH ELMGTEAGGM GNVGYTRDDL KRYLRTRRER  180
SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY NFFGNVVTFD  240
TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKHPSTIL  300
TDQDHAMAAA LSIVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE  360
QFNRVWEAMV KKHNLENNEW LSGLYKIHDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH  420
LKLDHNLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVFA  480
AFQNEYGEST AMVILRQQDA AMFVEFAVMR YDGGSERTVV FNRNDLSVRC SCKKYENEGI  540
LCGHALKEFD TVGIKIIPPE YIKRRWTKRA RAGDCFDRRG QEVVADPKVM ISTRYREFAP  600
AMIKVATRAA MSKDTSKVAI TVISDLSKRV ELLLSESEEQ PLQNQKNLNM EKRDKIEMVN  660
EMGEAVVARG IKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1 family protein