PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027089825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 302aa MW: 31372.3 Da PI: 9.5846 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.8e-09 | 106 | 130 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC+ + Ck+Gd+C+FaHg XP_027089825.1 106 KTRLCNKYNTAEGCKFGDKCHFAHG 130 8***********************8 PP | |||||||
2 | zf-CCCH | 37.8 | 3.2e-12 | 269 | 294 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ G C +GdrC+FaHg+ XP_027089825.1 269 FKTKLCENFAK-GSCTFGDRCHFAHGE 294 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence |
MEFGGARKRG RPDGGAATNG NGGIKKSKQE TESFSSGIGS KSKPCTKFFS TSGCQFGEGC 60 HFLHYVPGGI KAVTQILGSN PALPAASRNP VVPPSFPDGS SPPAVKTRLC NKYNTAEGCK 120 FGDKCHFAHG AWELGKPTAP VHEDPRATGP LPGRFGGRME STPPDFGAAG SFGASATAKI 180 SVDASLAGAI IGKGGVNSKH ICRTTGAKLA IRDHDSDPNS KNIELEGTFD QIKLATQMVR 240 ELIANVSSAA RPPLKNHGGP KGSAAASNFK TKLCENFAKG SCTFGDRCHF AHGEEELRSS 300 GI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-61 | C3H family protein |