PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027089785.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 94aa    MW: 10950.3 Da    PI: 8.8144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027089785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+   +l+ +a + + ++   +++  a+ +g g+t +++k ++ +
   XP_027089785.1  6 TWTAKQNKLFENALATYDKDtpdRFHNLAKAVG-GKTVEEVKRHYEM 51
                     7********************************.***********76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    
MASNSTWTAK QNKLFENALA TYDKDTPDRF HNLAKAVGGK TVEEVKRHYE MLVQDINHIE  60
SGKVPLPNYS SNGNSNKEYQ YMHEEQRMKY LKLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-38MYB_related family protein