PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027089633.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20211.9 Da    PI: 4.3672
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027089633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.83.7e-101158249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie +   + tf k r  ++  A+EL++ C +++ viifs+tg+ + +
  XP_027089633.1 11 KIEKEDDLYATFYKLRDELFMEASELCTTCKVDIGVIIFSPTGEPHSF 58
                    6788888899*********************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MKGREKIEMK KIEKEDDLYA TFYKLRDELF MEASELCTTC KVDIGVIIFS PTGEPHSFFH  60
PNADKVFNRF LGRDMPRDDA DQLAEALARA RVEQLEQQLH ELEVQQEIEE ERAKKLDDLF  120
AQDGIVGWPG VPIDQMDMEM VTNLEAKIDN LLLQLEEHAK KLTEEASSSN VSPSKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.15e-17M-type_MADS family protein