PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027089628.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 845aa    MW: 91546.3 Da    PI: 6.1438
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027089628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.67.4e-1264888432374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeav++++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+ + s    ++ ++a+++f+ +sP++kfsh+
  XP_027089628.1 488 LTLLLQCAEAVAADNLEEANNMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPAVPHS----QKMVSAFQVFNGISPFIKFSHF 578
                     579*************************************************************99996....89999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfefn+ va+++ +l++
  XP_027089628.1 579 TANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRMTGLGT----SMEALEATGKRLSDFAEKLGLPFEFNA-VADKVGNLDP 668
                     *****************************************************....***************************.8********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                      +L+v+++Ea+aV++    h l+d s+s +s    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE
  XP_027089628.1 669 GRLKVSKREAVAVHWLQ--HCLYDVSGSDTS----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVE 756
                     ****************9..889988888888....**********************.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r  + + +++Wr++l ++GFk ++l+ +aa+qa lll +++sdgy++ e++g+l lgW+d  L+++SaWr
  XP_027089628.1 757 QQLLSREIRNVLAVGGPSRSSDVK-FNNWRQKLLQSGFKGISLGGNAAAQATLLLGMFPSDGYTLVEDNGTLKLGWRDLCLLTASAWR 843
                     ******************888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MAKAFSLVND SGRRGNSSLN NCSDDSPLPI SSNKDFNVPL HSSLNLHSGK MARKRAASDI  60
EIQPVQRFLR RTASPTTTAD IIPLDEFGVC SINIVDTNTG VINNPNQHQH PDDVPTYSTT  120
IVLPSCTDLS VTSSSAGGTG SESAFSTSSS SNMMGSLSPA PLPHNLIHHR QRPQTQTHTP  180
SICGFSGLPL FPPDRNKYAA AGGAEQLLPS STSTSSNTAA GIDGAMLFTM EDNTTAAAWI  240
DSIIKDLIHN SANVSIPQLI QNVREIIHPC NPNLAALIEY RLRSLTCSAG AADTPIPDNY  300
HPERRRRESI SVAPNLQRQE DYFHLQGQGH GQLLAGSSGL KLYLDEDNLL SHTNTHSPLI  360
QDQYLNWGFA LPRTASTAVG GNSQQQQPMR NNDPAAAAAT GVSYVSSATV PNLTNQVHHR  420
SQQQQQSSEP EETQTPQPSE QQHRDSPPPP DADADAAAAV TAASSASRSL RNEEIRQQKR  480
DEQGLHLLTL LLQCAEAVAA DNLEEANNML LEISELSTPF GTSAQRVAAY FSEAMSARLV  540
SSCLGIYASL PAVPHSQKMV SAFQVFNGIS PFIKFSHFTA NQAIQEAFDR EERVHIIDLD  600
IMQGLQWPGL FHILASRPGG PPFVRMTGLG TSMEALEATG KRLSDFAEKL GLPFEFNAVA  660
DKVGNLDPGR LKVSKREAVA VHWLQHCLYD VSGSDTSTLW LLQRLAPKVV TVVEQDLSHA  720
GSFLGRFVEA IHYYSALFDS LGACYGEESE ERHVVEQQLL SREIRNVLAV GGPSRSSDVK  780
FNNWRQKLLQ SGFKGISLGG NAAAQATLLL GMFPSDGYTL VEDNGTLKLG WRDLCLLTAS  840
AWRPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303308ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein