PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089618.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 552aa MW: 58267.1 Da PI: 4.2735

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.1	1.1e-18	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien r+ +fskR+ng+ KKA+EL++LC +++ ++ifs+t+k y + XP_027089618.1 15 KKIENADDRYASFSKRKNGMYKKASELCTLCSTDIGILIFSPTNKPYSF 63 68******************************************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MEGKQTRGRR KIEMKKIENA DDRYASFSKR KNGMYKKASE LCTLCSTDIG ILIFSPTNKP 60 YSFFHPTMET VLNRFHKKDQ QPDPTQQLIE AYTRANVDRL NKQLDELDAQ MEIESNRAKH 120 LDQIGAPKDP FAWLPTPIQE MDEEMVAKVE AWVDDMLVQL QNHANELNKG ASSSAAVPQA 180 AGPSASAYVP IQDFGFGTAS SSAGFHPQDY TFGGSSSAFV PPKDFNVGGS SSAFVPPKDF 240 NVGGSSSAFV PPKDFNVGGS SSAFVPPKDF NVGGSSSAFV PPKDFNIGSS SSAFVPPKNF 300 NIGGSSSAFV PAKDFNVGGS SSAFVPPKDF NVGGSSSAYF PPKALNVGGS SSAFVPSNYF 360 NVGGSSSAFV PPEDFNLGAP SSGVAPPEDF NLGAPSSAVA PVADSSFGVS SEDFTFGTSS 420 SAFVSSEDFN LGASSSAAIP PEGYSFEEFY YEAASSLGVA PEDFYSEVSP PFVLPRDDFN 480 YETSSITPME SYNFEAPSII PPPEDFSVGA SSSPIPPPED FTAGASSSPI PPPEDFGAGP 540 SSSPFPPKNS NP

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MEGKQTRGRR KIEMKKIENA DDRYASFSKR KNGMYKKASE LCTLCSTDIG ILIFSPTNKP  60
YSFFHPTMET VLNRFHKKDQ QPDPTQQLIE AYTRANVDRL NKQLDELDAQ MEIESNRAKH  120
LDQIGAPKDP FAWLPTPIQE MDEEMVAKVE AWVDDMLVQL QNHANELNKG ASSSAAVPQA  180
AGPSASAYVP IQDFGFGTAS SSAGFHPQDY TFGGSSSAFV PPKDFNVGGS SSAFVPPKDF  240
NVGGSSSAFV PPKDFNVGGS SSAFVPPKDF NVGGSSSAFV PPKDFNIGSS SSAFVPPKNF  300
NIGGSSSAFV PAKDFNVGGS SSAFVPPKDF NVGGSSSAYF PPKALNVGGS SSAFVPSNYF  360
NVGGSSSAFV PPEDFNLGAP SSGVAPPEDF NLGAPSSAVA PVADSSFGVS SEDFTFGTSS  420
SAFVSSEDFN LGASSSAAIP PEGYSFEEFY YEAASSLGVA PEDFYSEVSP PFVLPRDDFN  480
YETSSITPME SYNFEAPSII PPPEDFSVGA SSSPIPPPED FTAGASSSPI PPPEDFGAGP  540
SSSPFPPKNS NP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	9e-27	M-type_MADS family protein