PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089412.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TALE

Protein Properties

Length: 379aa MW: 42268.5 Da PI: 6.2293

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089412.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	307	341	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_027089412.1 307 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 341 569*****************************885 PP
2	ELK	41	3.9e-14	261	282	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_027089412.1 261 ELKGQLLRKYSGYLGSLKQEFM 282 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MEGSSSTSCL MMAFGGDNSS GALGGPTSPM MMMMMPPQMT SSTHLNAETN TLYLPLPHAH 60 PGDTQDHPNN RRTAATSASS MMQLDDENHN NSHHNLSSST TGGGSYFVDH SNNDIGGSYS 120 SSPPPSVKAK IMAHPHYHRL LAAYINCQKI GAPPEVVARL EEVCTSAASL SRNNTSCIGE 180 DPALDQFMEA YCEMLTKYEE ELSKPFKEAM LFLSRVECQF KALTLASSDS ACGEAMDRNG 240 SSEEEVDVNN SFIDPQAEDR ELKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLD 300 WWSRHYKWPY PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQL VVMDATHPHY 360 YMDNVLGNPF PMDISPALL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MEGSSSTSCL MMAFGGDNSS GALGGPTSPM MMMMMPPQMT SSTHLNAETN TLYLPLPHAH  60
PGDTQDHPNN RRTAATSASS MMQLDDENHN NSHHNLSSST TGGGSYFVDH SNNDIGGSYS  120
SSPPPSVKAK IMAHPHYHRL LAAYINCQKI GAPPEVVARL EEVCTSAASL SRNNTSCIGE  180
DPALDQFMEA YCEMLTKYEE ELSKPFKEAM LFLSRVECQF KALTLASSDS ACGEAMDRNG  240
SSEEEVDVNN SFIDPQAEDR ELKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLD  300
WWSRHYKWPY PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQL VVMDATHPHY  360
YMDNVLGNPF PMDISPALL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	286	LKQEFMKKRK
2	283	287	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-142	TALE family protein