PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027089273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26529.8 Da PI: 7.3906 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.0003 | 187 | 223 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+r+++ Lr ++P a ++ +++L +Av+Y+ksL XP_027089273.1 187 RQRMRKMVKALRGIVPGA-----HQMDTVAVLDEAVRYLKSL 223 899999999********8.....58***************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MQKNQQLFPR KPFLSPANEA GGYMLSAPIS SVFGETICPP GATGLWPLHD VEFRPSETCP 60 RNFIIFDQTD NRSQIMLHPA TGSRFCYPGS NTWAAPSEYK AVKFADNEHR EVTSLKEDSD 120 DINALLSSDD EHEECDDDEL STARANVYCG SNSPDSCSNY DSPPRKTRIT SSRKTSGDVS 180 SCTGRKRQRM RKMVKALRGI VPGAHQMDTV AVLDEAVRYL KSLKVEVQKL GVGKLKSYT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 191 | RKRQRMR |
2 | 186 | 191 | KRQRMR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.1 | 2e-26 | bHLH family protein |