PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027089260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB_related | ||||||||
Protein Properties | Length: 278aa MW: 30807.2 Da PI: 5.1314 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ XP_027089260.1 55 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 99 789*****************88.*********.************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence |
MVAEAPDLIE GTSHDVSLGM RAHLETTAAQ TQALTEMGNG YALKVRKPYT IKKQREKWTE 60 EEHQRFLEAL KLYGRAWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSNEC EGSLNPIEIP 120 PPRPKKKPAH PYPRKVTDVT KTTLDDPHQP EQAPPFKRSG EERNSRSPTS VLSALGSDTS 180 GSPSSEPQRS HLSPVSYTTD DAHSAIVQLT ENDNECMTSD SSVEEEKEYG HAILLATSAT 240 QDDESAMELD LLTFGRACPA EDPAFEQAPA KLSCLEEL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 8e-41 | MYB_related family protein |