PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088787.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 351aa MW: 39087.8 Da PI: 8.8892

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.9	1.3e-18	18	102	2	74
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt qe+++Liea+r ++er +++ ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ ++ XP_027088787.1 18 WTVQETMVLIEAKRMDDERRMKRQgdsvggekpggkPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRLADH 102 ************777777664334555556666599***************************************997443 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MANQGGNNVL RDYRKGNWTV QETMVLIEAK RMDDERRMKR QGDSVGGEKP GGKPAELRWK 60 WVEDYCWRNG CLRSQNQCND KWDNLMRDFK KVREYERRLA DHQQQLITIG ESSSERERSD 120 EKSYWKLEKN ERKANNLPSN LLPQIYDALV EVVEKKVQRG SVVGLVGAGG TTASIPNVPP 180 SSAAALVGQP SSLPPSMQHL PISPPVSALP LPPPVVAQTP VQQQQQHPHT HPFSQQLPTV 240 DSDTSEHSDS PAKRRRRGEG TSGGASGSES HEVGTAISRS ASVIAETIQA CEEREERRHR 300 ELLSLHERRL QIEESKAEIS RQGINGLVDA VNKLANSILA LASHKTQSTP K

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MANQGGNNVL RDYRKGNWTV QETMVLIEAK RMDDERRMKR QGDSVGGEKP GGKPAELRWK  60
WVEDYCWRNG CLRSQNQCND KWDNLMRDFK KVREYERRLA DHQQQLITIG ESSSERERSD  120
EKSYWKLEKN ERKANNLPSN LLPQIYDALV EVVEKKVQRG SVVGLVGAGG TTASIPNVPP  180
SSAAALVGQP SSLPPSMQHL PISPPVSALP LPPPVVAQTP VQQQQQHPHT HPFSQQLPTV  240
DSDTSEHSDS PAKRRRRGEG TSGGASGSES HEVGTAISRS ASVIAETIQA CEEREERRHR  300
ELLSLHERRL QIEESKAEIS RQGINGLVDA VNKLANSILA LASHKTQSTP K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-56	Trihelix family protein