PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088785.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 355aa MW: 39568.4 Da PI: 8.8903

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.8	1.4e-18	22	106	2	74
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt qe+++Liea+r ++er +++ ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ ++ XP_027088785.1 22 WTVQETMVLIEAKRMDDERRMKRQgdsvggekpggkPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRLADH 106 ************777777664334555556666599***************************************997443 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MHIVMANQGG NNVLRDYRKG NWTVQETMVL IEAKRMDDER RMKRQGDSVG GEKPGGKPAE 60 LRWKWVEDYC WRNGCLRSQN QCNDKWDNLM RDFKKVREYE RRLADHQQQL ITIGESSSER 120 ERSDEKSYWK LEKNERKANN LPSNLLPQIY DALVEVVEKK VQRGSVVGLV GAGGTTASIP 180 NVPPSSAAAL VGQPSSLPPS MQHLPISPPV SALPLPPPVV AQTPVQQQQQ HPHTHPFSQQ 240 LPTVDSDTSE HSDSPAKRRR RGEGTSGGAS GSESHEVGTA ISRSASVIAE TIQACEEREE 300 RRHRELLSLH ERRLQIEESK AEISRQGING LVDAVNKLAN SILALASHKT QSTPK

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MHIVMANQGG NNVLRDYRKG NWTVQETMVL IEAKRMDDER RMKRQGDSVG GEKPGGKPAE  60
LRWKWVEDYC WRNGCLRSQN QCNDKWDNLM RDFKKVREYE RRLADHQQQL ITIGESSSER  120
ERSDEKSYWK LEKNERKANN LPSNLLPQIY DALVEVVEKK VQRGSVVGLV GAGGTTASIP  180
NVPPSSAAAL VGQPSSLPPS MQHLPISPPV SALPLPPPVV AQTPVQQQQQ HPHTHPFSQQ  240
LPTVDSDTSE HSDSPAKRRR RGEGTSGGAS GSESHEVGTA ISRSASVIAE TIQACEEREE  300
RRHRELLSLH ERRLQIEESK AEISRQGING LVDAVNKLAN SILALASHKT QSTPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-56	Trihelix family protein