PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088719.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 374aa    MW: 41037.1 Da    PI: 3.9444
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.6e-142270149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie k n  v+fs Rr+g++KKAeE S   +a+va+++ s+ g+++++
  XP_027088719.1 22 KKIEMKKNLLVSFSERRAGLFKKAEEYSKKSGAQVAILVQSPGGRFFTF 70
                    68999*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MEENAVILNK RNFGGRRKIQ IKKIEMKKNL LVSFSERRAG LFKKAEEYSK KSGAQVAILV  60
QSPGGRFFTF GGPDSASVDS ILDQYPVGMM PSSSSSSSSK NDTVVDYQGK SKPVEIEENS  120
MEEEVIEQGL METNQVSDRK ESLLKQPLDN DDLHWVDGLK NYMVTMKGLE GEELSQEDDG  180
TNRAADDNIN GDPDSSSLLN PNVNLDYFGG FPVNNDQIIG GADIAVNDAN PVYISGLPVN  240
NDLFQEYNEM TRAAADAASS SLLIPKVNLD YFSGLPKNND FFQGDEMARP ADTINGDADS  300
SSLVIPNVNL DYFGGLPMNN DFFQDDEMNR AADAVNGDVD SSSLLISSVN LDCFGGLPVD  360
FDFDELSPQY NDWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.17e-17M-type_MADS family protein