PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088712.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 123aa    MW: 13506.4 Da    PI: 10.2128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.45e-152270149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie k n  v+fskRr+g++ KAeE S   +a+va+++ s+ g+++++
  XP_027088712.1 22 KKIEKKKNLLVSFSKRRAGLFRKAEEYSKKSGAQVAILVQSPGGRFFTF 70
                    68**********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MEENAVILNK RNFGGRRKIQ IKKIEKKKNL LVSFSKRRAG LFRKAEEYSK KSGAQVAILV  60
QSPGGRFFTF GGPDSASVDS ILDQYLAGMM PSSSSSASCK NGTVVDDQGK SKPVEIEENT  120
MEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.13e-15M-type_MADS family protein