PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088710.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 109aa    MW: 11742.6 Da    PI: 10.5737
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.11.7e-212267247
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    +i+ k+n qvtfskRr g+lKKA ELS LC+a+vav++ s+ gk++
  XP_027088710.1 22 KIQKKTNLQVTFSKRRRGLLKKAAELSALCGADVAVLVQSPAGKVF 67
                    6999***************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    
MEGTATLVKK KSSGRKKIEI QKIQKKTNLQ VTFSKRRRGL LKKAAELSAL CGADVAVLVQ  60
SPAGKVFAAN GRASVNSIID RYVAGKASSS SSCNDVVNQI DCQQEEEKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-21M-type_MADS family protein