PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088563.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 553aa MW: 64281.1 Da PI: 7.4958

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088563.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.2	8.6e-16	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk F + ks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ tr+gC a+++vk + + k++vt++ e nH+la XP_027088563.1 86 EFYNLYAKLNEFGIHKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRIGCGACFRVKYDIeSVKYVVTRFIMEYNHPLA 176 6*************998887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MGQDGALKTH DMVQETENGK MGLDVCGRLR SFDLNQEPEC DRDTFIEESG GSIGGHEDEE 60 ANELVGAIGV DDVMKLTFDT EEEAWEFYNL YAKLNEFGIH KSNAKRDADG ISRFRKWVCC 120 CEGYRNEKWF NYEDRKREAK PITRIGCGAC FRVKYDIESV KYVVTRFIME YNHPLASEAN 180 VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER 240 RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAR LFWADSKSRA DFSVFGDVLV 300 FDTTYKTNKY RKALVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKDRKPVV 360 VMTDGDSAMR RAIKNLLPDA CHRLYSWHLH RIARSNIRCE EFNNRFYNLM ARKCSTLEFE 420 DRWARLVNEC GVVENEWVKK LYRRRRLWAE AYLRGHFFAG MRSTQRCEKM NAFLNEYLNE 480 KMRLYEFVRS FDLAIAWLRH TESKAVHTSE NTKPVLTTIL PELEGSAAEV FTRNVLFMVR 540 KHLNRQELLI SEG

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MGQDGALKTH DMVQETENGK MGLDVCGRLR SFDLNQEPEC DRDTFIEESG GSIGGHEDEE  60
ANELVGAIGV DDVMKLTFDT EEEAWEFYNL YAKLNEFGIH KSNAKRDADG ISRFRKWVCC  120
CEGYRNEKWF NYEDRKREAK PITRIGCGAC FRVKYDIESV KYVVTRFIME YNHPLASEAN  180
VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER  240
RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAR LFWADSKSRA DFSVFGDVLV  300
FDTTYKTNKY RKALVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKDRKPVV  360
VMTDGDSAMR RAIKNLLPDA CHRLYSWHLH RIARSNIRCE EFNNRFYNLM ARKCSTLEFE  420
DRWARLVNEC GVVENEWVKK LYRRRRLWAE AYLRGHFFAG MRSTQRCEKM NAFLNEYLNE  480
KMRLYEFVRS FDLAIAWLRH TESKAVHTSE NTKPVLTTIL PELEGSAAEV FTRNVLFMVR  540
KHLNRQELLI SEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	447	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-81	FAR1 family protein