PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088557.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 322aa    MW: 37043.1 Da    PI: 9.302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.52.7e-90132138360
            GRAS  38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaL 132
                     m+Rla+yf+ AL+arla+++++ly     ++ s    ++ l+ +++f+ + P+ k+s++ aN+ I + ++g++r+HiiDf+i +G+QWp+L+q L
  XP_027088557.1   1 MERLAHYFAIALEARLAGTGTTLYTDYXKRRIS---AADILNGYQMFVSAIPFKKVSNIFANKNIGKLAAGATRLHIIDFGILYGFQWPCLIQRL 92 
                     89**********************999888888...99********************************************************* PP

            GRAS 133 asRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                     + Rpegpp l iTg++ p++g   +e++eetg rLa+++e++gvpfef++ +ak++ +++le+L+++ +E+l+Vn+v +l +++de+v  +s+rd
  XP_027088557.1  93 SVRPEGPPALCITGIDLPQPGlrPAERVEETGLRLARYCERFGVPFEFRP-IAKKWXTIKLEDLKINGDEVLVVNCVERLANVPDETVVENSPRD 186
                     **************************************************.7******************************************* PP

            GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                     +vL+l+k+++P++++ +  +  +ns+ F++rf eal ++s++fd++ea++ re+++r+  Ere+ +r++ nv+ac g+er+er et+++W+ r  
  XP_027088557.1 187 AVLNLIKRIRPNMFIQSVINGTYNSPFFVTRFREALFHFSSVFDMFEATVLRENQDRALFEREIYARDALNVIACXGTERVERPETYKQWQVRNL 281
                     *********************************************************************************************** PP

            GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                     +aGF+++pl+++++k ++  ++ ++ + ++v+e+ +++++
  XP_027088557.1 282 RAGFRQLPLDQEIVKIIRGKVKSHYHRDFSVDEDGKWMLQ 321
                     *************************999******999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MERLAHYFAI ALEARLAGTG TTLYTDYXKR RISAADILNG YQMFVSAIPF KKVSNIFANK  60
NIGKLAAGAT RLHIIDFGIL YGFQWPCLIQ RLSVRPEGPP ALCITGIDLP QPGLRPAERV  120
EETGLRLARY CERFGVPFEF RPIAKKWXTI KLEDLKINGD EVLVVNCVER LANVPDETVV  180
ENSPRDAVLN LIKRIRPNMF IQSVINGTYN SPFFVTRFRE ALFHFSSVFD MFEATVLREN  240
QDRALFEREI YARDALNVIA CXGTERVERP ETYKQWQVRN LRAGFRQLPL DQEIVKIIRG  300
KVKSHYHRDF SVDEDGKWML QG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-141GRAS family protein