PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027088499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 116aa MW: 13064.4 Da PI: 4.7139 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.6 | 7.8e-14 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+k ++ tf R++g++KKA L L da va+i +s+tgk+ ey XP_027088499.1 9 KKIEDKKKQRDTFEARQQGLFKKARQLVQLYDAGVALITISETGKISEY 57 68**********************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence |
MGKRKLEVKK IEDKKKQRDT FEARQQGLFK KARQLVQLYD AGVALITISE TGKISEYGNP 60 TLDSILQRYQ EAKKGEAAAK ASNDVQPQAE NLPKHDADET EESPDDDDQN TSDQEI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 16 | KRKLEVKKIEDKKK |
2 | 4 | 17 | KRKLEVKKIEDKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-11 | MIKC_MADS family protein |