PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027088315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 306aa MW: 35156.6 Da PI: 7.4995 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.7e-17 | 20 | 105 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + +g+l lpk+f++e+g + ++l+ +sg ++v + +k ++ +l++GW++F++ + L g f+ Fk++g+sef v +f+ XP_027088315.1 20 TQPAVDEGQLGLPKNFVKEYGDE--ICSSVRLNVPSGGIFRVGI--EKDENMLWLRDGWQRFAEHHSLTFGHFLWFKYKGNSEF--DVAIFD 105 445556678***********865..4449***************..**********************************9999..888876 PP | |||||||
2 | B3 | 57.5 | 2.5e-18 | 205 | 297 | 3 | 97 |
EE-..-HHHHTT-E.E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrl.vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + ++++++l+++ + +p +f +++ +k + l+d++g++W+v +i ++++ + l+kGW F+++++L++gD++vF++++++ +v+ XP_027088315.1 205 SMTMKEYNLSRCYIvHVPAEFSSTYlR-T--DKKSVELQDSDGNKWTVGVI-VRHGRVISLSKGWGYFCRDHKLCSGDVCVFEVIKSRPVVIKVT 295 55678899999766479*****99953.3..3356***************5.5666679************************998766666666 PP EE CS B3 96 vf 97 +f XP_027088315.1 296 IF 297 66 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MKNNRDWQSL DASSFYRIIT QPAVDEGQLG LPKNFVKEYG DEICSSVRLN VPSGGIFRVG 60 IEKDENMLWL RDGWQRFAEH HSLTFGHFLW FKYKGNSEFD VAIFDLTATE IDYQCCSNNS 120 KKFNPVAETT VPEPEHDAFC SAKADDRHPI EISSSSETEE VEIRDVTTDS GNPRSIRRRS 180 RRRGKKISEH DVVTRLFKSD NPYFSMTMKE YNLSRCYIVH VPAEFSSTYL RTDKKSVELQ 240 DSDGNKWTVG VIVRHGRVIS LSKGWGYFCR DHKLCSGDVC VFEVIKSRPV VIKVTIFPAR 300 ESVEVK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 186 | RRSRRRGKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-25 | B3 family protein |