PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027088304.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22466.7 Da PI: 4.9948 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.5 | 1e-42 | 51 | 150 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++hk+FGasn++k+l++lpe++r da++s+vyeA+ r+rdPvyG++g i +lq+q+++l+aela XP_027088304.1 51 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHKVFGASNIIKMLQELPEDQRADAVNSMVYEANSRIRDPVYGCAGAICQLQKQISELQAELA 145 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027088304.1 146 KAQAE 150 *9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MECSSTTTTT TTMCAASQNQ PLSPSSSPSL SPRAGSPKNG PPSPPPVILS PCAACKILRR 60 RCAEKCVLAP YFPPTEPLKF TIAHKVFGAS NIIKMLQELP EDQRADAVNS MVYEANSRIR 120 DPVYGCAGAI CQLQKQISEL QAELAKAQAE MLNFQCQNDN LKSLICMGMA AQDDQEIKPE 180 QHLSCDNTSL FLDDANIYAA WEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-64 | LBD family protein |