PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027087965.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 20795.6 Da PI: 4.3854 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.8 | 3.9e-10 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie + + tf k r ++ A+EL++ C +++ viifs+tg+ + + XP_027087965.1 16 KIEKEDDLYATFYKLRDELFMEASELCTTCKVDIGVIIFSPTGEPHSF 63 6788888899*********************************98776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MGDKQMKGRE KIEMKKIEKE DDLYATFYKL RDELFMEASE LCTTCKVDIG VIIFSPTGEP 60 HSFFHPNADK VFNRFLGRDM PRDDADQLAE ALARARVEQL EQQLHELEVQ QEIEEERAKK 120 LDELFAQDGI VGWPGVPIDQ MDMEMVTNLE AKIDNLLLQL EEHAKKLTEE ASSSNVPPSK 180 I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01530.1 | 5e-17 | M-type_MADS family protein |