PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087794.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 486aa MW: 53046.7 Da PI: 5.2423

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.2e-31	249	307	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ XP_027087794.1 249 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 307 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MCSRLLQKME NYQGDLADIL RASGGRSIAS SNISSAEVSV SAPRDWQFPS NQVGIYEEPS 60 LDEFGDPFTN MRDPLLLPDM DHMPTSGFYD ASSTDHIITS GTTTAAENTG GFSCSDVGGG 120 GGVGGCNNSS SLLTQRILDD HELSRRPPNN IFTRMLQISP NAKPPSSPRE SQLLVAPSPR 180 GLKPPTLVTN DMINTSNNSK VSVIENAPVQ ISSPRNTGIK RRKSQAKKVV CIPAPAPANS 240 RPSGEIVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY 300 TSEHNHPWPT QRNALAGSTR SQPTKSGSTS KATNSSHAQK ATNLKEEEKP ETQTDNASSP 360 IVTGSSSTGQ VVKEETEMEM EVEGLDKKME MDNLDQFNEG FPQSYKPGLP DSNHSEDFFA 420 DLSELEADPL NLLFTQGYSG DEERENKNLE LFSFYDWTTN NSSMTTTTIM TTTTITSSLE 480 EAKKGS

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MCSRLLQKME NYQGDLADIL RASGGRSIAS SNISSAEVSV SAPRDWQFPS NQVGIYEEPS  60
LDEFGDPFTN MRDPLLLPDM DHMPTSGFYD ASSTDHIITS GTTTAAENTG GFSCSDVGGG  120
GGVGGCNNSS SLLTQRILDD HELSRRPPNN IFTRMLQISP NAKPPSSPRE SQLLVAPSPR  180
GLKPPTLVTN DMINTSNNSK VSVIENAPVQ ISSPRNTGIK RRKSQAKKVV CIPAPAPANS  240
RPSGEIVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY  300
TSEHNHPWPT QRNALAGSTR SQPTKSGSTS KATNSSHAQK ATNLKEEEKP ETQTDNASSP  360
IVTGSSSTGQ VVKEETEMEM EVEGLDKKME MDNLDQFNEG FPQSYKPGLP DSNHSEDFFA  420
DLSELEADPL NLLFTQGYSG DEERENKNLE LFSFYDWTTN NSSMTTTTIM TTTTITSSLE  480
EAKKGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	7e-82	WRKY family protein