PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087316.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TALE

Protein Properties

Length: 390aa MW: 43489.8 Da PI: 5.9533

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	318	352	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_027087316.1 318 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 352 569*****************************885 PP
2	ELK	41	4e-14	272	293	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_027087316.1 272 ELKGQLLRKYSGYLGSLKQEFM 293 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MEGSSSTSCL MMAFGGDNSS GALGGPTSPM MMMMMPPQMT SSTHLNAETN TLYLPLPHAH 60 PSDTQDHPNN RRTAATSASS MMQLDDENHN NSHHNLSSST TGGGSFFVDH SNNDIGGSYS 120 SSPPPSVKAK IMAHPHYHRL LAAYINCQKI GAPPEVVARL EEVCTSAASL SRNNTSCIGE 180 DPALDQFMEA YCEMLTKYEE ELSKPFKEAM LFLSRVECQF KALTLASSDS DAHENTLEIL 240 AACGEAMDRN GSSEEEVDVN NSFIDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK 300 LPKEARQQLL DWWSRHYKWP YPSESQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ 360 LVVMDATHPH YYMDNVLGNP FPMDISPALL

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MEGSSSTSCL MMAFGGDNSS GALGGPTSPM MMMMMPPQMT SSTHLNAETN TLYLPLPHAH  60
PSDTQDHPNN RRTAATSASS MMQLDDENHN NSHHNLSSST TGGGSFFVDH SNNDIGGSYS  120
SSPPPSVKAK IMAHPHYHRL LAAYINCQKI GAPPEVVARL EEVCTSAASL SRNNTSCIGE  180
DPALDQFMEA YCEMLTKYEE ELSKPFKEAM LFLSRVECQF KALTLASSDS DAHENTLEIL  240
AACGEAMDRN GSSEEEVDVN NSFIDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK  300
LPKEARQQLL DWWSRHYKWP YPSESQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ  360
LVVMDATHPH YYMDNVLGNP FPMDISPALL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	297	LKQEFMKKRK
2	294	298	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-140	TALE family protein