PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087153.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 414aa MW: 44901.4 Da PI: 8.5702

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.9	7.2e-13	73	98	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_027087153.1 73 GQPECQYYLKTGTCKFGATCKFHHPR 98 5799********************96 PP
2	zf-CCCH	36.1	1.1e-11	122	144	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ XP_027087153.1 122 ECAYYLRTGHCKFGSTCKFHHPQ 144 7********************97 PP
3	zf-CCCH	38.7	1.6e-12	276	302	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ XP_027087153.1 276 PGQPECQFYMKTGDCKFGAVCKFHHPR 302 5789*********************96 PP
4	zf-CCCH	40.2	5.5e-13	322	348	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_027087153.1 322 PGEPLCIFYSRYGICKFGPSCKFDHPM 348 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MEIIVTAILL KLLVLLLLLL LIKLKSAAEA ESAWISIPEF PFPEHLSSPK VLPLSTKAIA 60 TARMRGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPREK AGIAGRVTLN ALGYPLRPNE 120 IECAYYLRTG HCKFGSTCKF HHPQPANMMV SVRGSPVYPS VHSPTNPGQL SYPLSRASFI 180 PSPRWQGPSS YAPVLVPQSM VSVSGWNAYS GQLGSGSSAE SQQQTAGNDQ THGMVGQSEA 240 ANVGSQGIHS SYSSSSLPIG YYALQLQRET VFPERPGQPE CQFYMKTGDC KFGAVCKFHH 300 PRERILPAPD CGLSPIGLPL RPGEPLCIFY SRYGICKFGP SCKFDHPMGV FTYNVSSSST 360 EPPTVRRLLG SSSGTGPLTL ASEGLVEASS TKSRLLPLSE ARKPSGDTSI DPEE

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MEIIVTAILL KLLVLLLLLL LIKLKSAAEA ESAWISIPEF PFPEHLSSPK VLPLSTKAIA  60
TARMRGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPREK AGIAGRVTLN ALGYPLRPNE  120
IECAYYLRTG HCKFGSTCKF HHPQPANMMV SVRGSPVYPS VHSPTNPGQL SYPLSRASFI  180
PSPRWQGPSS YAPVLVPQSM VSVSGWNAYS GQLGSGSSAE SQQQTAGNDQ THGMVGQSEA  240
ANVGSQGIHS SYSSSSLPIG YYALQLQRET VFPERPGQPE CQFYMKTGDC KFGAVCKFHH  300
PRERILPAPD CGLSPIGLPL RPGEPLCIFY SRYGICKFGP SCKFDHPMGV FTYNVSSSST  360
EPPTVRRLLG SSSGTGPLTL ASEGLVEASS TKSRLLPLSE ARKPSGDTSI DPEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-145	C3H family protein