PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027086812.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 503aa MW: 55150 Da PI: 6.9807

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027086812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.1	7.8e-17	199	248	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_027086812.1 199 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 248 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MLLDLNIDAD AAAAASVDSA CDETDPFPCP VKTTAASTAT LLTDHDSGAS SSVLIIADEE 60 SNSSSPPTHN QPHHRCTTTT LNFSILNATG EDHIIQILDN DQDFDNDDHR QGLMTRQFFP 120 VVPNNDPFPF PTTTTTTTAR PPQWLKLSVP EAAAAGEIGG IYNKGQQQQQ HQLGQPYQQH 180 QVAGGGAKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHTAARAYD 240 RAAIKFRGVD ADINFHISDY ADDLKQMQNL TKEEFVHILR RHSTGFSRGS SKYRGVTLHK 300 CGRWEARMGQ FLGKKAYDKA AIKCNGREAV TNFEHSAYEG EISGAAKDGD AGRGDNLDLN 360 LWISPASDGQ KEIGDSKSSC GHYAASDDKM IKVENSFNTP EYLPMASQDS SVWTHTYSGF 420 GPKNEERARK MRPEGIPIPG LSNWPWKMHC HGVITSVPLF PSAASSGFST VTATSTTLVS 480 TNAPNKIVHT SAFQHPPLTL NYN

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MLLDLNIDAD AAAAASVDSA CDETDPFPCP VKTTAASTAT LLTDHDSGAS SSVLIIADEE  60
SNSSSPPTHN QPHHRCTTTT LNFSILNATG EDHIIQILDN DQDFDNDDHR QGLMTRQFFP  120
VVPNNDPFPF PTTTTTTTAR PPQWLKLSVP EAAAAGEIGG IYNKGQQQQQ HQLGQPYQQH  180
QVAGGGAKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHTAARAYD  240
RAAIKFRGVD ADINFHISDY ADDLKQMQNL TKEEFVHILR RHSTGFSRGS SKYRGVTLHK  300
CGRWEARMGQ FLGKKAYDKA AIKCNGREAV TNFEHSAYEG EISGAAKDGD AGRGDNLDLN  360
LWISPASDGQ KEIGDSKSSC GHYAASDDKM IKVENSFNTP EYLPMASQDS SVWTHTYSGF  420
GPKNEERARK MRPEGIPIPG LSNWPWKMHC HGVITSVPLF PSAASSGFST VTATSTTLVS  480
TNAPNKIVHT SAFQHPPLTL NYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	2e-81	AP2 family protein