PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027086811.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 518aa MW: 56878 Da PI: 6.7927

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027086811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.1	8.1e-17	199	248	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_027086811.1 199 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 248 78*****************......55**********************997 PP
2	AP2	41.1	4.6e-13	291	341	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_027086811.1 291 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 341 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MLLDLNIDAD AAAAASVDSA CDETDPFPCP VKTTAASTAT LLTDHDSGAS SSVLIIADEE 60 SNSSSPPTHN QPHHRCTTTT LNFSILNATG EDHIIQILDN DQDFDNDDHR QGLMTRQFFP 120 VVPNNDPFPF PTTTTTTTAR PPQWLKLSVP EAAAAGEIGG IYNKGQQQQQ HQLGQPYQQH 180 QVAGGGAKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHTAARAYD 240 RAAIKFRGVD ADINFHISDY ADDLKQMQNL TKEEFVHILR RHSTGFSRGS SKYRGVTLHK 300 CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR AYDKAAIKCN GREAVTNFEH SAYEGEISGA 360 AKDGDAGRGD NLDLNLWISP ASDGQKEIGD SKSSCGHYAA SDDKMIKVEN SFNTPEYLPM 420 ASQDSSVWTH TYSGFGPKNE ERARKMRPEG IPIPGLSNWP WKMHCHGVIT SVPLFPSAAS 480 SGFSTVTATS TTLVSTNAPN KIVHTSAFQH PPLTLNYN

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MLLDLNIDAD AAAAASVDSA CDETDPFPCP VKTTAASTAT LLTDHDSGAS SSVLIIADEE  60
SNSSSPPTHN QPHHRCTTTT LNFSILNATG EDHIIQILDN DQDFDNDDHR QGLMTRQFFP  120
VVPNNDPFPF PTTTTTTTAR PPQWLKLSVP EAAAAGEIGG IYNKGQQQQQ HQLGQPYQQH  180
QVAGGGAKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHTAARAYD  240
RAAIKFRGVD ADINFHISDY ADDLKQMQNL TKEEFVHILR RHSTGFSRGS SKYRGVTLHK  300
CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR AYDKAAIKCN GREAVTNFEH SAYEGEISGA  360
AKDGDAGRGD NLDLNLWISP ASDGQKEIGD SKSSCGHYAA SDDKMIKVEN SFNTPEYLPM  420
ASQDSSVWTH TYSGFGPKNE ERARKMRPEG IPIPGLSNWP WKMHCHGVIT SVPLFPSAAS  480
SGFSTVTATS TTLVSTNAPN KIVHTSAFQH PPLTLNYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-92	AP2 family protein