PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027086777.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 285aa    MW: 32076.5 Da    PI: 9.6162
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027086777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.91.3e-1822106275
        trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                     Wt qe+++Liea+r ++er  +++             ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ + ++
  XP_027086777.1  22 WTVQETMVLIEAKRMDDERRMKRQgdsvggekpggkPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRLA-DH 106
                     **************777777664334555556666599*****************************************9974.33 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MHIVMANQGG NNVLRDYRKG NWTVQETMVL IEAKRMDDER RMKRQGDSVG GEKPGGKPAE  60
LRWKWVEDYC WRNGCLRSQN QCNDKWDNLM RDFKKVREYE RRLADHQKQL ITIGESSSER  120
ERSDEKSYWK LEKNERKANN LPSNLLPQIY DALVEVVERK VQRGSVVGLV GAGGTTASIP  180
NVPPSSAAAL VGQPSSLPPS MQHLPISPPV SALPLPPPVV AQTPVQQQQQ HPHTHPFSQQ  240
LPTILIRVSI QTHQQRGEEE GKGPVGEQVV ANHMKLALQF LGVLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-57Trihelix family protein