PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027086639.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23325 Da    PI: 4.3942
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027086639.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.4e-162270149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie k n  v+fskRr+g++KKAeE S   +a+va+++ s+ g+++++
  XP_027086639.1 22 KKIEKKKNLLVSFSKRRAGLFKKAEEYSKKSGAQVAILVQSPGGRFFTF 70
                    689*********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MEENAVILNK RNFGGRRKIQ IKKIEKKKNL LVSFSKRRAG LFKKAEEYSK KSGAQVAILV  60
QSPGGRFFTF GGPDSASVDS ILDQYLAGMM PSSSSSASCK NGTVVDDQGK SKPVEIEENT  120
MEEEVIEQGL METNQVSDGK ESLLKQPLDN DDLQRVDELE NYMVTMKGLE GEELSQEDDG  180
TNRAADDNIN GDPDSSSLLN PNVNLDYFGG FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.15e-15M-type_MADS family protein