PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027086602.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 279aa    MW: 32402.8 Da    PI: 6.9952
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027086602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1561.3e-1726111189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+YA ++ Fsvrk++ +k  ++g +t+r  +C keg +++ k +    +rtra t+tgC  ++ v +++ + k+++++l+leHnHel
  XP_027086602.1  26 KFYNNYAFKMSFSVRKDYVNKD-KDGVTTSR--RCCKEGVKRKYKGD-LMPKRTRAPTKTGCGTNMIVVLHSeTMKYRMHDLVLEHNHEL 111
                     6****************99998.66645544..57788888877777.79999************999999989***************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MNCSKLAGDE IPELGMEFNN EEDAYKFYNN YAFKMSFSVR KDYVNKDKDG VTTSRRCCKE  60
GVKRKYKGDL MPKRTRAPTK TGCGTNMIVV LHSETMKYRM HDLVLEHNHE LHIAQCSHMM  120
PSQRKVSGAQ GFQIEISEDA GLSLKQSHEL MGKEAGGMGN VGYIRDDPKR YLSTRRKRSL  180
QYGEAGSMLN YFQEQTLENP SFFHVVQLDC EEQIMNIFWT DARILIDYKF FGDVVIFDTT  240
YKTNKEYQSL EVFVGFNQHR QIVIFGAAFM YDETIDYFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-46FAR1 family protein