PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027086520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ARF | ||||||||
Protein Properties | Length: 835aa MW: 92093 Da PI: 6.9503 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.5e-23 | 179 | 280 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_027086520.1 179 FCKTLTASDTSTHGGFSVPRRAAEDCfpplnyE-EPRPSQELVARDIHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEG 270 99****************************954.445678*************************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+++++r+ XP_027086520.1 271 GDLRLGIRRA 280 999**99986 PP | |||||||
2 | Auxin_resp | 101 | 1.6e-33 | 305 | 386 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s++++F+++Y+ ras+++F+v+++k++k++++++ vG+Rfk++++ ++++ rr+sG+v+gv d+dp rWpnSkWr+L XP_027086520.1 305 VANAVSSNTAFKIFYSTRASHADFIVPYQKYVKSINNQIPVGTRFKISIDLDNAPDRRYSGVVTGVGDVDPHRWPNSKWRCL 386 689******************************************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence |
MEIDLNHAIV ESSEVEKNAN ACSCNGECDK GGCGFGCVYC SLSTSTSSCS SNASSSNPPP 60 PSKIFMELWY ACAGPVTSLP KKGNVVVYFP QGHLEQAASV SSFPALEVPS FDLQPQIFCK 120 VLEVELLANK ENDEVYTQLT LLPISEVLAL RSGGKDHEEA GTEEERTEAV PIKSTSHMFC 180 KTLTASDTST HGGFSVPRRA AEDCFPPLNY EEPRPSQELV ARDIHGVEWR FRHIYRGQPR 240 RHLLTTGWSI FVSQKNLVSG DAVLFLRGEG GDLRLGIRRA AGLRNGLSEL VIKSQNAYPR 300 VLAPVANAVS SNTAFKIFYS TRASHADFIV PYQKYVKSIN NQIPVGTRFK ISIDLDNAPD 360 RRYSGVVTGV GDVDPHRWPN SKWRCLMVRW EEDASNRHER VSPWEIDFSA SFANMSIQTS 420 PRMKKLRTCM QADVQNSSRN GADLLSPMPY TNNVSGANKA VMTPPVWNGY IPGQVPLWDF 480 AESARSGKVL QGQENLGLAS PLYGGDKINR QLDFEMHPVA HQQFVSNGME KANYSDFSRS 540 QPSITYSGSM ETNSFPKVLQ GQEICSLKSL TGKTELNPSG WRKPELGGNI LNINQRSFPS 600 CYPLASEGIR NVVFPYNGVY KAGQDPVMLS YMANRERENH VLNSKSFRDG PTKEDGRHLS 660 LANEPKAFEK KSIVPTTGTP LNNKKDENKG AGSVCKLFGV SLTEEAPASS SQSSSRRSCT 720 KVHKQGNLVG RAIDLSKLKS YDDLLVELEK LFSMEGMLRE PGKGWRVLYT DSEKDMMVVG 780 DDPWPEFCDV VSKIHILTIE EVQKMSIGVL SDETRSCLEE SPAVMDGSKS SVTAP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | ARF family protein |