PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027086465.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28319.6 Da PI: 4.3982 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.6 | 2.5e-11 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+k ++qvtf+kRr+ +lK A EL daevav i s+ +++ + XP_027086465.1 9 KKIEDKKKQQVTFTKRRKRLLKMAMELGQKYDAEVAVTIRSNASNIFAF 57 68*************************************9998777655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MGKRRIEIKK IEDKKKQQVT FTKRRKRLLK MAMELGQKYD AEVAVTIRSN ASNIFAFGHP 60 SNLPEDDLDE TEESPDDDDD DQEMSDCVME VNKAKLSSEN RNGDQDEVHD VAEKDDISDI 120 EEFLDDDDDD VDQEMSDHEM EKTVLMMMTV KMMIRRIRWG SQKNATDQQV QDTGNVVKKQ 180 ENSTANSIMM PNLIRDVPPV DDLELHELQE SMAQLEKMKK KVTDPVNQIR KSSADSSCDF 240 NKNART |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-07 | M-type_MADS family protein |