PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027086269.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 407aa MW: 43695.2 Da PI: 7.8151

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027086269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	37	60	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ ++ H H XP_027086269.1 37 FKCHVCHKKLSTAGGMQIHVLQvH 60 89*****************87655 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MGKKKKRAQT SKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAG GMQIHVLQVH 60 KENVSKVPNA KPGRESTDIE IYGMQGIPPD ILAAHYGEED DEAPAKTPKV EILPTQVGGV 120 VQGSLGVGFP PQSSVGVMPT LYNPAVPIPP AGWPVAPRPQ PWYPQHSAVS VPPSAPLGLP 180 PQPLFPVQNL RPPLPPTAPP GLQASVPVVP PGLPAPPPIP VSQPLFPVVP SSNVPAQNSA 240 FSAPMLPTSL PLSTLTETKN SVDGYLNNNA SVTNTFATPG IPAAMPVNSH SYASGPNTGG 300 PSIGPPPVIA NKAPASQPAG NEVYLVWDDE AMSMEERRMS LLKYQVHDET SQVSHNYPVR 360 PTKILSYSCG HELLPYPDGY LVVVQIQLLT HCFLKVLFCT SCPSLSP

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MGKKKKRAQT SKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAG GMQIHVLQVH  60
KENVSKVPNA KPGRESTDIE IYGMQGIPPD ILAAHYGEED DEAPAKTPKV EILPTQVGGV  120
VQGSLGVGFP PQSSVGVMPT LYNPAVPIPP AGWPVAPRPQ PWYPQHSAVS VPPSAPLGLP  180
PQPLFPVQNL RPPLPPTAPP GLQASVPVVP PGLPAPPPIP VSQPLFPVVP SSNVPAQNSA  240
FSAPMLPTSL PLSTLTETKN SVDGYLNNNA SVTNTFATPG IPAAMPVNSH SYASGPNTGG  300
PSIGPPPVIA NKAPASQPAG NEVYLVWDDE AMSMEERRMS LLKYQVHDET SQVSHNYPVR  360
PTKILSYSCG HELLPYPDGY LVVVQIQLLT HCFLKVLFCT SCPSLSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	1e-120	C2H2 family protein