PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085989.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 711aa MW: 77644 Da PI: 7.2348

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.8	4.9e-24	117	218	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + + XP_027085989.1 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RAE 207 89**************************997556555..8********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_027085989.1 208 SGDLCVGIRRA 218 9999**997 PP
2	Auxin_resp	110	2.4e-36	287	369	2	83
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ a ++++F+vvY+Prast+eF vk+++v++a++v++++GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ XP_027085989.1 287 ASFAVKGQPFDVVYYPRASTPEFFVKASSVSSAMRVQWCAGMRFKMPFETEDSSRISWfMGTIAAVQFADPIRWPNSPWRLLQ 369 6677899**************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MKEMVEKSLD SQLWHACAGG MVQMPVVNSR VYYFPQGHAE HTLANVDFAG MPRVQPLILC 60 RVAAVKFLAD PETDEVYARV RLVPIGNNEG CYEFDDDGGG VLGGNGPDSS ADKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYTA DPPVQTVVAK DVHGETWKFR HIYRGTPRRH 180 LLTTGWSTFV NQKKLIAGDS IVFLRAESGD LCVGIRRAKR GGIGGPESPS GWNSAAGNYG 240 GFSMFLREDE NKLMRTGSAG NLNSPGNGGG ALKGRGRVRA ESVIEAASFA VKGQPFDVVY 300 YPRASTPEFF VKASSVSSAM RVQWCAGMRF KMPFETEDSS RISWFMGTIA AVQFADPIRW 360 PNSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPVIHL SPFSPARKKL RLLQHSDFSL 420 DGQFPMPSFS GNPLGPSSPL CCLSDNIPAG IQGARHAQLG VQLADLHLSN KMHLGLISPS 480 FQQLDPLAKS SDGIIRGHLD SSDDISCLLT MGNSSQKLEK TTSVRTPRFL LFGQPILTEQ 540 QMSHGYNSDA VSQVGKSSAC GISLKAEDVS LDQKVHMDSL PNTGLFWNQG CHAAELGLDT 600 GHCKVFLESE DVGRTLDLSV LGSYEELYKK LTSMFMIERS ELEGHVFYRD ATGALKQTGD 660 ESFSEFVRTA KRLTIFKNPG NSVGRKWLTG LPTAERGLDS SNQAGPLSIF A

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MKEMVEKSLD SQLWHACAGG MVQMPVVNSR VYYFPQGHAE HTLANVDFAG MPRVQPLILC  60
RVAAVKFLAD PETDEVYARV RLVPIGNNEG CYEFDDDGGG VLGGNGPDSS ADKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYTA DPPVQTVVAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSTFV NQKKLIAGDS IVFLRAESGD LCVGIRRAKR GGIGGPESPS GWNSAAGNYG  240
GFSMFLREDE NKLMRTGSAG NLNSPGNGGG ALKGRGRVRA ESVIEAASFA VKGQPFDVVY  300
YPRASTPEFF VKASSVSSAM RVQWCAGMRF KMPFETEDSS RISWFMGTIA AVQFADPIRW  360
PNSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPVIHL SPFSPARKKL RLLQHSDFSL  420
DGQFPMPSFS GNPLGPSSPL CCLSDNIPAG IQGARHAQLG VQLADLHLSN KMHLGLISPS  480
FQQLDPLAKS SDGIIRGHLD SSDDISCLLT MGNSSQKLEK TTSVRTPRFL LFGQPILTEQ  540
QMSHGYNSDA VSQVGKSSAC GISLKAEDVS LDQKVHMDSL PNTGLFWNQG CHAAELGLDT  600
GHCKVFLESE DVGRTLDLSV LGSYEELYKK LTSMFMIERS ELEGHVFYRD ATGALKQTGD  660
ESFSEFVRTA KRLTIFKNPG NSVGRKWLTG LPTAERGLDS SNQAGPLSIF A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein