PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027085926.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 348aa    MW: 37807.4 Da    PI: 8.1296
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027085926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.7e-19251284134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_027085926.1 251 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 284
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MSMVEPGYWD GFVKGVPGGE DDFANLLGIL DFPMESLEGD DELAGDWDAS KSQSLGPIPS  60
EAFMGLPPVP QGNAGNRSLE NPPKPNAVPK LNASGGQTAN QKQIPDYVKE SSSTNTSRQI  120
TSSEGQESGS FQTHSPVSVL ESGGSCSGGK SLPIKSDIVI PVRTRSKRAR PSAINPWFVM  180
APISCAASAS KRTSSHRKNK EKKKKLSQLS LASNEADDSF QQAKEESFHL SSDVSEKNET  240
SLQRSVAAKK CTHCEVTKTP QWREGPMGPK TLCNACGVRY RSGRLFPEYR PAASPTFMPT  300
LHSNSHRKVV EMRKKAMQET AMSSHDDAPM SPAPEFVPMS SYLFDFIY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168RTRSKR
2191206KRTSSHRKNKEKKKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-44GATA family protein