PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085797.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 267aa MW: 28712.2 Da PI: 6.3137

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	168.9	6e-53	64	158	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl+++re++g XP_027085797.1 64 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRFREFDG 158 69******************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MELGGNGGFT GYRRFPQPNS GMMRAAEISM GLPSKTNHTT PPSSSSSSPA AAADHMMMDG 60 ECTVREQDRF MPIANVIRIM RKILPPHAKI SDDAKETIQE CVSEYISFIT GEANERCQRE 120 QRKTITAEDV LWAMSKLGFD DYIEPLTLYL HRFREFDGGE RGGSLRAAHH DLAVGKRANI 180 DHLAAAAGLG LGGGGFATYP PPHFHLPHHP PFVAAGFFTT AAVPIHMNGF LKDPSSTGGG 240 QATSSQAAAV AASDGGHQEQ AFDNCEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.1	2e-61	NF-YB family protein